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    bam samtools cram-size-v -o out.

  • 4) with the -a option and a bed file listing the human chromosomes chr1-chr22, chrX, chrY, and chrM to print out the coverage at every position: I would like to know how to run samtools depth so that it produces 3,088,286,401 entries when run against a GRCh38 bam file.
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    fasta samtools fasta input.